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This Ivy Glioblastoma Atlas Project Clinical and Genomic Database contains detailed de-identified clinical and genomic data on the 41 patient cohort analyzed by histology and gene expression profiling in the Ivy Glioblastoma Atlas Project (Ivy GAP), which is described in:


Puchalski RB, Shah N, Miller J, Dalley R, Nomura SR, Yoon JG, Smith KA, Lankerovich M, Bertagnolli D,  Bickley K, Boe AF, Brouner K, Butler S, Caldejon S, Chapin M, Datta S, Dee N, Desta T, Dolbeare T, Dotson N, Ebbert A, Feng D, Feng X, Fisher M, Gee G, Goldy J, Gorley L, Gregor BW, Gu G, Hejazinia N, Hohmann J, Hothi P, Howard R, Joines K, Kriedberg A, Kuan L, Lau C, Lee F, Lee H, Lemon T, Long F, Mastan N, Mott E, Murthy C, Ngo K, Olson E, Reding M, Riley Z, Rosen D, Sandman D, Shapovalova N, Slaughterbeck CR, Sodt A, Stockdale G, Szafer A, Wakeman W, Wohnoutka PE, White SJ, Marsh D, Rostomily RC, Lydia Ng L, Dang C, Jones AJ, Keogh B, Gittleman HR, Barnholtz-Sloan JS, Cimino PJ, Uppin MS, Keene CD, Farrokhi FR, Lathia JD, Berens ME, Iavarone I, Bernard A, Lein E, Phillips JW, Rostad SW, Cobbs C, Hawrylycz MJ, and Foltz GD.  An anatomic transcriptional atlas of human glioblastoma.Science360, 660-663 (2018).doi:10.1126/science.aaf2666

The MRI data sets are available at the Cancer Imaging Archive.

The RNA-Seq and copy number data are available at Gene Expression Omnibus through GEO series accession number GSE107560. 

Original principal investigators

Swedish Neuroscience Institute
        Greg D. Foltz, MD, Neurosurgeon
        Nameeta Shah, PhD, Scientist

Allen Institute for Brain Science
        Ralph B. Puchalski, PhD, Research Alliance Manager

 

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